A method for recovering the performance of a fuel cell stack mounted within a vehicle is provided. A method includes a recovery process of continuously applying a predetermined load using a load device when an air supply is stopped and hydrogen is supplied to a fuel cell stack to output current from the fuel cell stack. Further, protons and electrons generated by hydrogen oxidation reaction at an anode are moved to a cathode, to produce hydrogen at the cathode and simultaneously remove oxide on the catalyst surface of the cathode.