The invention discloses a method and system for obtaining a friction temperature rise condition in an end face seal structure. Based on complicated working condition features of end face seal and thestructure dimension, accurate friction temperature rise calculation is conducted. According to the method and system for obtaining the friction temperature rise condition in the end face seal structure, based on measured values of an operating test, the actual working conditions of the end face seal structure are obtained, on the basis of the actual working conditions, in combination with geometric dimension features of the end face seal structure and actual working conditions of different areas of dynamic and static rings in the work process, the thermography of the end face seal structure isobtained through simulation software, and then the friction temperature rise condition in the end face seal structure are accurately and visually obtained.