Embodiments of the present invention provide an uplink transmission method, a base station and a user equipment. The method includes: receiving uplink split information sent by a first base station, wherein the uplink split information is used for instructing a second base station to receive data in buffers corresponding to N1 logic channel groups of a user equipment, the N1 logic channel groups are determined by the first base station from a BSR sent by the UE, and N1 is a positive integer larger than 0; determining N2 logic channel groups from the N1 logic channel groups, wherein N2 is a non-negative integer smaller than or equal to N1; and sending feedback information to the first base station, wherein the feedback information is used for indicating the determined result. In an embodiment of the present invention, a flexibility of the uplink transmission is improved.