A fuel cell system includes a battery, auxiliary machines including an actuator and a heater that heats cooling water circulating in the fuel cell. The actuator is driven to cause gas to be supplied to a fuel cell configured to generate electric power using the gas. Furthermore, the fuel cell system includes a warming-up operation unit that adjusting operations of the auxiliary machines so as to realize output of fuel cell such that a predetermined electric power is extracted, a discharge control unit that supplies the electric power from the battery to the auxiliary machines when electric power generated by the fuel cell is lower than electric power consumed by the auxiliary machines. Furthermore, the fuel cell system includes an auxiliary machine restriction unit that restricts electric power consumed by the actuator when the discharge control unit supplies the electric power from the battery to the auxiliary machines in a case where the fuel cell is warmed up using the heater.