The present invention relates to a method for preparing dimethyl ether from methanol which is carried out in a reaction device arranged with a plurality of catalyst bed layers connected in series, and comprises: dividing the reactant stream that contains methanol into n substreams, and feeding these different substreams into the reaction device through top feed ports or side feed ports between the catalyst bed layers of the reaction device for methanol-to-dimethyl ether reaction; wherein, the temperature T1 of the substream fed into the first catalyst bed layer is controlled within the following range: 290−50K1≤T1≤150K12−271K1+397.5; where, 1>K1≥0.5, and T1 is in unit of ° C.