A pulse tube refrigerator includes a compressor, a regenerator to which a refrigerant gas is discharged from the compressor and from which the refrigerant gas returns to the compressor, a pulse cube including a low-temperature end connected to the low-temperature end of the regenerator, and a flow rate controller provided at the low-temperature end of the regenerator. The flow rate controller is configured to control the flow rate of a first DC flow flowing from the regenerator toward the pulse tube and the flow rate of a second DC flow flowing from the pulse tube toward the regenerator, so that the flow rate of the first DC flow is greater than the flow rate of the second DC flow.