An apparatus and method of submitting hardware accelerator engine commands over an interconnect link such as a PCI Express (PCIe) link. In one embodiment, the mechanism is implemented inside a PCIe Host Bridge which is integrated into a host IC or chipset. The mechanism provides an interface compatible with other integrated accelerators thereby eliminating the overhead of maintaining different programming models for local and remote accelerators. Co-processor requests issued by threads requesting a service (client threads) targeting a remote accelerator are queued and sent to a PCIe adapter and remote accelerator engine over a PCIe link. The remote accelerator engine performs the requested processing task, delivers results back to host memory and the PCIe Host Bridge performs a co-processor request completion sequence (status update, write to flag, interrupt) included in the co-processor command.