In one embodiment, a method is performed by a computer system. The method includes, responsive to deployment of at least one component of a virtual desktop infrastructure (VDI) in a multilayer VDI architecture, creating an integrated topology model (ITM) instance of interconnected topology objects, the ITM instance comprising: a physical-and-virtual infrastructure topology model (PVI-TM) instance comprising first interconnected topology objects; a VDI topology model (VDI-TM) instance comprising second interconnected topology objects; and an access gateway topology model (AG-TM) instance comprising third interconnected topology objects. The method further includes generating dependencies between the interconnected topology objects of the ITM instance, wherein the dependencies comprise. In addition, the method includes generating a dependency graph for the multilayer VDI architecture based, at least in part, on the dependencies. Also, the method includes outputting at least a portion of the dependency graph for presentation to a user.