The present invention is an ammonia sequestering system including a system controller connected to a plurality of flow control valves, a feed stream extending through a system inlet, and a system outlet. The feed stream is a liquid contaminated with ammonia. At least one exchange column is located between the system inlet and the system outlet. The ion column includes an ion exchange material, a column inlet connected to one of the flow control valves, and a column outlet connected to another of the flow control valves. The system also includes a regenerant stream of an aqueous solution of sodium cations, as well as an ammonia brine stream made up of the regenerant stream and ammonia.