The control system of an internal combustion engine of the present invention comprises an S/V ratio changing mechanism able to change an S/V ratio of a combustion chamber and a detection device having an output value changing in accordance with a hydrogen concentration in exhaust gas, which increases along with an increase in the S/V ratio, the internal combustion engine being controlled by the output value of the detection device. Further, the output value of the detection device or a parameter relating to operation of the internal combustion engine is corrected in accordance with the S/V ratio of the above S/V ratio changing mechanism. Due to this, even if the hydrogen concentration in the exhaust gas increases along with an increase in the S/V ratio, the internal combustion engine can be suitably controlled.