A hydrogen water manufacturing system includes: a container-shaped constant pressure maintaining unit receiving water and maintaining a water level; an electrolysis unit including a hermetically sealed container bisected into an oxygen generation chamber and a hydrogen generation chamber with an ion exchange membrane interposed therebetween, wherein the chambers independently receive the raw water from the constant pressure maintaining unit, and a positive electrode plate is provided in the oxygen generation chamber and a negative electrode plate is provided in the hydrogen generation chamber; a fluid pump receiving the water and hydrogen from the hydrogen generation chamber; a dissolution unit having a nozzle to inject the water and the hydrogen supplied from the fluid pump; and a flow rate detection sensor arranged on piping downstream of the dissolution unit to detect supply of hydrogen water and drive the fluid pump and simultaneously supply electrical power to the electrolysis unit.