A geometric error identification method of multi-axis machine tool includes a measuring step of indexing a position of a target ball mounted on one of a main spindle and a table into a plurality of angles around an rotation axis, and measuring the position of the target ball at respective indexed positions by using a touch probe mounted on the other one of the main spindle and the table, a geometric error calculation step of calculating a geometric error from the measured position of the target ball, an ellipse-expression calculation step of calculating an ellipse approximate expression by an arc trajectory measured by operating the rotation axis, and an error correcting step of calculating and correcting a scaling error of translation axes from the calculated ellipse approximate expression.