In one embodiment, a computer-implemented method includes capturing a consistent state of data blocks in a namespace cache of a deduplicating storage system. The data blocks contains data for a file system namespace organized in a hierarchical data structure. Each leaf page of the hierarchical data structure contains one or more data blocks. The method further includes determining, for each data block, whether the data block has been written to base on the captured consistent state. For at least one of the written data blocks in the namespace cache, the method includes searching, in the hierarchical data structure, adjacent data blocks to find in the namespace cache one or more data blocks that have also been written to, and upon finding the one or more adjacent written data blocks, flushing the written data block and the found one or more adjacent written data blocks together into a common storage unit.