A control method and a control apparatus of a wind power generator set are provided, in which a wind speed at a location of the wind power generator set is acquired, turbulence intensity is calculated according to the wind speed, and a wind speed distribution range corresponding to the turbulence intensity is determined; a thrust variation amplitude of the thrust in the wind speed distribution range is determined based on a relationship among the thrust suffered by a wind wheel of the wind power generator set, a thrust coefficient and the wind speed; and a maximum rotating speed and a maximum torque of the wind wheel in the wind speed distribution range are adjusted according to the thrust variation amplitude. The maximum rotating speed and the maximum torque makes a fatigue load of the wind power generator set in the wind speed distribution range meet a preset standard.