Techniques and tools for conversion operations between modules in a scalable video encoding tool or scalable video decoding tool are described. For example, given reconstructed base layer video in a low resolution format (e.g., 4:2:0 video with 8 bits per sample) an encoding tool and decoding tool adaptively filter the reconstructed base layer video and upsample its sample values to a higher sample depth (e.g., 10 bits per sample). The tools also adaptively scale chroma samples to a higher chroma sampling rate (e.g., 4:2:2). The adaptive filtering and chroma scaling help reduce energy in inter-layer residual video by making the reconstructed base layer video closer to input video, which typically makes compression of the inter-layer residual video more efficient. The encoding tool also remaps sample values of the inter-layer residual video to adjust dynamic range before encoding, and the decoding tool performs inverse remapping after decoding.