Techniques herein include a method of patterning a substrate that uses a self-alignment based process to align a via to odd and even trenches by using multiple different materials. Methods herein decompose or separate a via pattern into spacer side via and mandrel side via, and then sequentially access the spacer side and mandrel side respectively. With such a technique, overlay of via to grid is significantly improved. By using an additional memorization layer underneath a trench memorization layer and independently accessing the spacer side and mandrel side in the midst of a trench pattern, significant improvement in via alignment is achieved.