A method for forming a semiconductor device structure and method for forming the same are provided. The method includes hybrid bonding a first wafer and a second wafer to form a hybrid bonding structure, and the hybrid bonding structure comprises a metallic bonding interface and a polymer-to-polymer bonding structure. The method includes forming at least one through-substrate via (TSV) through the second wafer, and the TSV extends from a bottom surface of the second wafer to a top surface of the first wafer.