A network system control method includes intercepting a flow modification message sent by a controller from a network protocol path between a switch and the controller so as to obtain a new flow entry; accessing a flow table of the switch so as to obtain a plurality of flow entries; inserting at least one redundant flow entry according to the new flow entry and the plurality of flow entries; performing an aggregation operation to the new flow entry, the plurality of flow entries and the at least one redundant flow entry so as to generate a set of aggregated flow entries; and updating the flow table using the set of aggregated flow entries.