A focus detection apparatus comprising: an acquisition unit that acquires, for each color, a correction value for correcting a pair of focus detection signals of respective colors acquired from a color image sensor based on color sensitivity information unique to the color image sensor which includes a plurality of photoelectric conversion portions for each of a plurality of microlenses, and performing photoelectric conversion on light entering via an imaging optical system to output an electric signal; a correction unit that corrects each focus detection signal by using the correction value; a generation unit that processes the pair of corrected focus detection signals of the respective colors, and generates a pair of focus detection signals; and a focus detection unit that detects an evaluation value based on the pair of focus detection signals.