The present technology relates to the field of configuration and setup of encrypted computer network transmission systems. In particular, the present technology relates to setting up and configuring network encryption systems, including MACsec, Internet Protocol Security (IPsec), and TLS protocols, in heterogeneous networks over Wireless Area Networks (WAN), Wireless Local Area Network (WLAN) or cellular links. In some embodiments, the present technology includes a method for setting up, configuring, and monitoring of encryption equipment providing encrypted links over WAN connections (typically IPsec VPN gateways and clients or TLS applications). The method includes communicating with encryption and PKI equipment necessary to automate the generation of encryption keys, digital certificates, and digital certificate signing requests. The method further includes communicating with the encryption equipment on one or both sides of an encrypted link to create security associations, and link encryption parameters, necessary for the encryptors to negotiate and establish encrypted links.