A storage aware memory controller for managing a physical storage system. A described controller: a system for mapping physical memory space into a memory region and a storage region; a system for applying different error protections schemes, in which a fine-grained memory fault tolerance scheme is applied to data in the memory region and a course-grained memory fault tolerance scheme is applied to data in the storage region; and a storage file system that includes a mapping table for mapping logical addresses to physical addresses for data stored in the storage region.