In a method for the optimization of multiple scan protocols for at least one magnetic resonance examination is performed by a magnetic resonance apparatus, patient data for at least one patient are recorded that includes the selection of two or more different measurements, each including at least one scan protocol, which includes at least one magnetic resonance examination. An optimized sequence of the multiple scan protocols for the two or more different measurements for the at least one magnetic resonance examination is determined by a protocol optimization computer. The optimized sequence of the multiple protocols is presented at a display monitor.