A system and method for physically destroying the data storage portion of electronic media electronic storage devices such as hard disk drives, solid state drives and hybrid hard drives that comprises a rotatable milling cutter and a cradle for locating the media electronic storage device in a positioned to engage the milling cutter. An integrated computer is included containing a data base of various parameters of different types of hard drives available. A scanning system determines information about the type of media electronic storage device being introduced in the system to be destroyed and conveys the such information to the computer whereby the data base may be used to provide information to properly locate the cradle and milling cutter to destroy the data storage portion and for printing out a certificate of destruction specifically identifying the hard drive that has had it data destroyed. A slug cutter is provided to retrieve slugs containing the rare earth metal after the data storage portion is destroyed.