A process for deoxygenating a pyrolysis oil stream comprises purposely limiting complete deoxygenation of the pyrolysis oil stream having a high oxygenate concentration to provide a hydrotreated pyrolysis oil stream that is sufficiently reduced in oxygenate content to mix with oil. By not fully deoxygenating the pyrolysis oil stream, the deoxygenation reaction can be run with little risk of undesirable polymerization reactions plugging the reactor.