The object of the invention is an apparatus for filling transport containers (1) with rod-like articles of the tobacco industry, provided with an area (2) receiving the rod-like articles in the form of a mass flow, a rod-like article storage area (3) comprising at least two sidewalls, a filling unit (4) constituting the bottom wall of the storage area for transferring the rod-like articles from the storage area to the transport container, a lowering conveyor (5) working together with the filling unit (4), adapted to lower the transport container while filling with the rod-like articles. The apparatus is characterised by being further provided with a counting module (6) designed to count the rod-like articles in the transport containers, adapted so that the individual rod-like articles being in the transport container are counted.