Target characteristic data may be predicted using an apparatus including a processor and one or more computer readable mediums collectively including instructions. When executed by the processor, the instructions cause the processor to obtain a plurality of physical structure data and a plurality of characteristic data, estimate at least one structural similarity between at least two physical structures that correspond with physical structure data among the plurality of physical structure data, and generate an estimation model for estimating a target characteristic data from a target physical structure data by using at least one characteristic data and corresponding at least one structural similarity between the target physical structure data and each of the plurality of the physical structure data.