According to one embodiment, a magnetic disk device includes a disk including a first region and a second region different from the first region, a head that writes data on the disk and reads data from the disk, an actuator that positions the head on the disk, and a controller which positions the head by driving the actuator and writes data in the first region and the second region with the head, a skew angle of the head with respect to a circumferential direction of the disk varying within a first angle in the first region, and varying, in the second region, from a second angle larger than the first angle to a third angle larger than the first angle and the second angle.