Invention Grant
- Patent Title: Automated database updating and curation
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Application No.: US15808630Application Date: 2017-11-09
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Publication No.: US10649982B2Publication Date: 2020-05-12
- Inventor: Stephen Fry , Jeremy Ellis , Matthew Shabilla
- Applicant: Fry Laboratories LLC
- Applicant Address: US AZ Scottsdale
- Assignee: FRY LABORATORIES, LLC
- Current Assignee: FRY LABORATORIES, LLC
- Current Assignee Address: US AZ Scottsdale
- Agency: Kilpatrick Townsend & Stockton LLC
- Main IPC: G06F16/23
- IPC: G06F16/23 ; G06F16/28 ; G06F16/22 ; G06F16/2458 ; G16B20/00 ; G16B30/10

Abstract:
Systems and methods for retrieval of information from read-only databases that hold taxonomic-related and sequence-related data. A method may include receiving organism names from a taxonomy database and detecting new organism names. The method may also include retrieving hierarchical data and assigning the new organism names to buckets based on the hierarchical data. The method may further include receiving sequence data elements from a nucleotide database, identifying particular buckets to correspond to a screener data set, querying organism names assigned to the particular buckets with names of reference sequences of the sequence data elements, generating a mapping between the sequence data elements and organism names returned as a result of the queries, and storing the mapping.
Public/Granted literature
- US20190138632A1 AUTOMATED DATABASE UPDATING AND CURATION Public/Granted day:2019-05-09
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