Systems and methods are provided for automatically separating and reconstructing individual stories of a three-dimensional model of a multi-story structure based on captured image data of the multi-story structure. In an aspect, a system is provided that includes an analysis component configured to analyze a three-dimensional model of structure comprising a plurality of stories generated based on captured three-dimensional image data of the structure and identify respective stories of the plurality of stories to which features of a three-dimensional model are associated. The system further includes a separation component configured to separate the respective stories from one another based on the features respectively associated therewith, and an interface component configured to generate a graphical user interface that facilitates viewing the respective stories as separated from one another.