A mobile device having a system for analyzing malicious code is provided. The mobile device includes a container agent generating at least one Android container executing Android malicious code for dynamic analysis in response to a request received from a cloud controller and checking a state of the at least one Android container, a Linux host, a hardware module containing an operating system (OS) for the Linux host, and an analysis agent detecting a problem occurring upon an operation of the Android malicious code in the at least one Android container through the Linux host, and transmitting information of kernel-related malicious code behavior to an analysis server.