A chipset with a near-data processing (NDP) engine, which uses the NDP engine to perform a command transformation and thereby to generate an input and output (I/O) command to operate a peripheral device connected to the chipset. The chipset further has a traffic control module. The chipset receives a request to operate the peripheral device, and the traffic control module directs the request to the NDP engine to be transformed into the I/O command. The NDP engine may implement a file system, or achieve acceleration of a database or may be operated to cope with a remote direct memory access packet.