A vehicle control system to accurately control a vehicle by estimating a position of an accelerator pedal. In a first phase of an operation of the accelerator pedal in which a depression of the accelerator pedal increases, a first predicted value of a position of the accelerator pedal is calculated by a first calculation procedure based on the position of the accelerator in the first phase. In a second phase in which the change amount of the position of the accelerator plateaus, a second predicted value of the position of the accelerator pedal is calculated by a second calculation procedure based on the position of the accelerator in the second phase. In a third phase in which the change amount of the position of the accelerator decreases, the second predicted value is employed as the predicted value of the position of the accelerator pedal.