A hand-operated tool for embossing a membrane or other soft pliable implant with microgrooves or microgeometries is disclosed. The tool includes an embossing surface such as a pressure plate or roller that includes a specific microgroove or microtopographical pattern. This allows a user such as a clinician to create an embossed surface on a membrane or other implantable device at the time of surgery for the purposes of directing cellular orientation and migration, increasing cell migration velocity and enhancing re-epithelialization rates in various medical and dental applications.