A multi-band communication system includes a plurality of transmit channels, where each transmit channel transmits data streams through a single sub-band, and a plurality of receive channels, where each receive channel receives data streams of a single sub-band. According to one embodiment of the invention, each transmit channel and its respective receive channel are configured with a different set of channel codes to encode and decode the data. The set of channel codes is determined by an adaptive modulation coding controller based on a condition of the link between a transmit channel and a receive channel.