The disclosed computer-implemented method for monitoring bait to protect users from security threats may include (i) monitoring a bait computing resource to detect attempts to access the bait computing resource, (ii) virtualizing the bait computing resource to prevent a false positive by hiding the bait computing resource from at least one trusted application that has been categorized as safe, (iii) detecting an attempt by a different application to access the virtualized bait computing resource, and (iv) performing a security action to protect a trusted user by reporting the attempt to access the virtualized bait computing resource by the different application. Various other methods, systems, and computer-readable media are also disclosed.