A method of cooling a motor coupled to a compressor of a chiller includes adjusting a position of a motor cooling valve located fluidly between the motor and a refrigerant source, using a motor temperature control system coupled to the motor cooling valve to regulate an amount of refrigerant introduced into the motor from the condenser according to a temperature control scheme performed as a function of a monitored temperature in the motor, a first temperature threshold, and a second temperature threshold lower than the first temperature threshold. The temperature control scheme includes a motor cooling control process that adjusts the position of the motor cooling valve based on a stator winding temperature set point relating to stator windings of the motor. A proportionally limited close command override associated with a first temperature range above the second temperature threshold proportionally limits a close command provided to the motor cooling valve.