A method of tracking a medical device includes creating a patient profile; creating an operating profile with at least one identified surgical site; providing a tracking assembly including a reader with a scanner, a housing enclosing the scanner and a medical drape; placing a medical device having an identifier over the reader; scanning the identifier of the medical device to electronically record the medical device data; associating the scanned medical device data with the at least one surgical site; and using the medical device on a patient on the at least one surgical site.