A medical image processing apparatus according to a present embodiment includes processing circuitry. The processing circuitry is configured to: acquire a subject image relating to a subject; acquire a standard image indicating a morphological structure of a human body and sections of a morphological structure from a memory which stores each standard image in association with sections of a morphological structure; set a comparison target portion of the subject image based on the subject image; set a comparison target portion of the standard image based on a comparison between the subject image and the standard image; specify a section in the comparison target portion of the subject image based on a comparison between the comparison target portion of the subject image and the comparison target portion of the standard image; and output the subject image and the section in association with each other.