A fingerprint identification system is provided, which includes: a plurality of first pixel circuits; a first sensing circuit for outputting a first output signal; at least one second pixel circuit; a second sensing circuit for outputting a second output signal, wherein the second sensing circuit includes a second integration circuit having a second integral input terminal; a second calibration circuit coupled to the second integral input terminal; a third calibration circuit coupled to the second integral input terminal, wherein the second calibration circuit and the third calibration circuit are used for calibrating the second output signal; and a differential amplifier circuit coupled to the first sensing circuit and the second sensing circuit and used for generating an amplified output signal.