A fuel cell based power generation system is presented. The fuel cell based power generation system includes a fuel cell assembly configured to generate a DC power, at least one assembly switching element configured to operatively couple the fuel cell assembly to a first DC bus, at least one converter coupled between the first DC bus and an electrical grid, a plurality of auxiliary loads operatively coupled to the first DC bus at a location between the at least one assembly switching element and the at least one converter, where at least one of the plurality of auxiliary loads is configured to receive power from the fuel cell assembly via the at least one assembly switching element, and a controller operatively coupled to the at least one converter, where the controller is configured to allow a voltage of the first DC bus to fluctuate within a range of voltage values.