The present embodiments provide an incinerator which includes a system for reducing NOx and CO emissions. A computational fluid dynamics module is configured to generate a plurality of models related to a plurality of incinerator parameters. A programmable logic controller dynamically maintains a plurality of set points. Further, the programmable logic controller receives a plurality of output signals from a plurality of sensors and compares the plurality of output signals with the plurality of set points. The programmable logic controller is further to affect an amount of above-fire combustion air, an amount of under-fire combustion air, and an amount of above-fire and under-fire flue gas recirculation to reduce NOx emissions produced by the incinerator.