A method, computer program product, and computer system are provided for running an application over a host kernel. The method intercepts a system call initiated by a container instance running on a host kernel, then determines whether the initiating container instance is tagged with a mapping to a virtual machine (VM) also running on the host kernel. The method further redirects the system call to the mapped VM responsive to the initiating container instance being tagged with a mapping to a VM, wherein the system call is to be processed by the VM.