An electronic device using a digital pen is provided. The electronic device includes a digital pen, a wireless communication circuit, a processor, and a memory operatively connected to the processor. The memory stores instructions which, when executed, cause the processor to receive a first input through the wireless communication circuit from the digital pen, identify whether a first application or a second application is being executed based on the reception of the first input, when the first application is being executed, identify and perform a first operation associated with the first application from one or more operations corresponding to the first input, and when the second application is being executed, identify and perform a second operation associated with the second application from the one or more operations corresponding to the first input, wherein the first application is different from the second application.