A pump control system and an abnormal processing and recovering method thereof are disclosed. The pump control system includes a pump; a motor mechanically connected to the pump; and a driving controller electrically coupled to the motor, and the driving controller configured to control a speed of the motor. The driving controller controls the speed of the motor to be varied in a multistage manner in response to an abnormal triggering event, so as to recover the pump control system to an originally set stable state. The abnormal triggering event is generated by at least one physical parameter when the pump control system is operated.