A thin type pump structure includes a pump housing, a rotor assembly, a stator assembly, a flow-guiding plate, and a closing member. The pump housing has a first side defining an open-topped pump chamber having a forward projected shaft and an opposite second side defining an open-bottomed annular recess at an area opposite to and around the pump chamber. The rotor assembly has a pivot hole and is received in the pump chamber with the pivot hole turnably around the shaft. The rotor assembly includes a blade wheel and a magnetic element located behind the blade wheel. The stator assembly is received in the annular recess to horizontally face toward the magnetic element, enabling mutual electromagnetic induction and magnetic field generation between the magnetic element and the stator assembly. The flow-guiding plate covers the pump chamber, and the closing member closes the pump housing from the first side thereof.