A method for preventing an incorrect learning of a clutch torque of a transmission of a vehicle may include a controller estimating an engine-based clutch torque estimated based on an engine torque; the controller estimating a wheel-based clutch torque estimated based on a driveshaft torsional torque; the controller determining a torque error, which is a difference between the engine-based clutch torque and the wheel-based clutch torque: the controller allowing a learning of the clutch torque when the torque error is equal to or less than a predetermined reference torque; and the controller prohibiting the learning of the clutch torque when the torque error is greater than the predetermined reference torque.