A display may have a pixel array such as a liquid crystal pixel array. The pixel array may be illuminated with backlight illumination from a backlight unit. The backlight unit may include an array of light-emitting diodes and a light reflector that helps reflect light from the light-emitting diodes through the pixel array. A color conversion layer may be used to convert light from the light-emitting diodes from blue light to white light. A microlens array layer formed over the color conversion layer may spread the light from the color conversion layer to homogenize the light. To ensure light is emitted from the backlight with a uniform color, the microlens array layer may have different transmittance portions. A central portion of the microlens array layer may transmit more light and reflect less light than an edge portion of the microlens array layer.