A valve controller for controlling a valve and a valve comprising the valve controller are disclosed. The valve has an actuator and a flow controlling unit. The valve controller is configured to execute a setup process and comprises a first pilot valve that can energize the actuator by allowing a first pressurized fluid to enter the actuator and de-energizing the actuator by allowing the fluid to leave the actuator. The valve controller further has an input device by which the setup process can be initiated, and a memory unit for storing setup parameter values. The setup process comprises: determining parameter values indicative of the functionality of at least one of the valve controller, the actuator and the flow controlling unit, and storing the parameter values as setup parameter values in the memory unit.