An endoscope system of the present invention includes: a first illumination unit that emits first illumination light for imaging two sets of image information about a subject at different depths; a second illumination unit that emits second illumination light having a wide band covering a visible band from a position different from the position of the first illumination light; an imaging unit that images a first illumination image and a second illumination image of the subject that is illuminated with the first illumination light and the second illumination light; a separation processing unit that separates the two sets of image information from the first illumination image; and a separated-image generating unit that generates two separated images by processing the second illumination image using the two sets of image information.