A method for generating stereoscopic imagery comprising the steps of building an automated benthic ecology system comprising a high-resolution still camera, a high-resolution video camera, an environmental sensor package, a stereoscopic camera, and underwater housing, wherein the high-resolution video camera is configured for constant recording, turning the video camera on and hovering the ABES at the desired depth for a specific period of time acquiring imagery, wherein the imagery is automatically time-stamped with a date and time, extracting frames from the video, matching the timestamps on the photographs with the timestamps of the ROV log, which provides latitude, longitude and depth measurements, georeferencing each image using GeoSetter software, stitching imagery from the stereoscopic camera into a panoramic image using software.